Scaffold JGI24006J15134_10007404

Overview

Basic Information

• Taxon OID: 3300001450
• Scaffold ID: JGI24006J15134_10007404
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5557
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016734	Metagenome / Metatranscriptome	245	Y
F036473	Metagenome / Metatranscriptome	170	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24006J15134_100074046	F016734	GGAG	MNSKQQKQYDTALDKMNLTDSQRDAFDHSVKKSLIDLDTYQDTDTFSLHGYKLNRVMDDIVLAQYVDLSEDGHSVIRNGIHIPLSQVKRTWRMARVILAGPKCKYTTPGDIVCFPDDKGIKVDNLSVTGFDSSIRDCLFLNEDRFFGICEEIEPDDSRTE*
JGI24006J15134_100074047	F036473	GAG	MLLDKVCEVKFARRNPKPGRPASRRMLCTNNVQLLNSVEGRTVLNYLPPRQAPAYNPNQENLIITWDILMQDFRTINCDTVDLITTLDADQTFWVYINEKIAPMSAGEKMAFMNT*