Scaffold JGI24006J15134_10005492

Overview

Basic Information

• Taxon OID: 3300001450
• Scaffold ID: JGI24006J15134_10005492
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6603
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (26.32%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006798	Metagenome / Metatranscriptome	364	Y
F017499	Metagenome / Metatranscriptome	240	Y
F035780	Metagenome / Metatranscriptome	171	Y
F087903	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24006J15134_1000549210	F017499	N/A	MSRYNSRMHGVTKDNVHVDINWGFDKALGYWYDIIETKDGEQSVIEEYSSIVNGGSRSIMLEFLIKYNCPEEHRSMVALDMAF*
JGI24006J15134_1000549214	F035780	N/A	MANIKILESKEVWSAITNEYELDIDGEIISVRIAENPKNTEFFEWNEISGWEEADIDDGLMKHVYEAWSNGELE*
JGI24006J15134_100054923	F006798	N/A	MDLQYIDQESVDNFINGMVDVETETILEDPQFSQILNGAVPQQILKHTNPLGTIESFLQLFIDREEYEICADLVKAVPELCKN*
JGI24006J15134_100054927	F087903	N/A	MTDTVEIEIEEILTEANAYNLRDEVKTTAXMFIMXDPQLDKVSAYNMAYLEWIK*