Scaffold JGI24006J15134_10001833

Overview

Basic Information

• Taxon OID: 3300001450
• Scaffold ID: JGI24006J15134_10001833
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11970
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (63.16%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028823	Metagenome / Metatranscriptome	190	Y
F036924	Metagenome / Metatranscriptome	169	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24006J15134_1000183311	F036924	AGAAG	MANAGIYYGRPSTVHKIDFTASSVPQSNAFSADTSYVMLCAKTAGCHFVVASTPTATVNAGSYLPKDEVILIKVSGGDKIGAIREASTSGSLYATEMV*
JGI24006J15134_1000183314	F028823	GGTGG	MIEFGDLQADLPTYQNSGAIKVDNVIPLTKGYRSFPSFVHLSNTGLTSTPVGLFSSFTSGGVTNYAGDTTKLYQMDSSLVFQDKSKSGGYSNNTNTXY*