Scaffold JGI24006J15134_10000309

Overview

Basic Information

• Taxon OID: 3300001450
• Scaffold ID: JGI24006J15134_10000309
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31560
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (71.11%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016673	Metagenome	245	Y
F020018	Metagenome	226	Y
F025517	Metagenome / Metatranscriptome	201	Y
F059458	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24006J15134_1000030914	F020018	GGAG	MKMLQVTIWLNPDDETWYKGTFITTQEWLMIEKERISKSINKRVVIKTHENGSKALFREKIR*
JGI24006J15134_1000030920	F016673	N/A	MVSESSIEDTVIKSYLELYLRSLNESRSHKFITIIKTRMLELIKRKQLRNQ*
JGI24006J15134_1000030936	F059458	GGAG	MIYLEDVKDEVNAMSVVPELEVQAIEATEAMVNKRNKINRAEADIKMVMKLCVVRKWKDPMNRLQQMLDRLGEAKAEFQVNLWRS*
JGI24006J15134_100003099	F025517	N/A	MYGVNAKLSKADFKCHMCHSYKNQDVYIWGNFEILPKHPYQEYRICKKCAIREHGSKRVKLETIIDERTKQWLEKQRQ*