Scaffold JGI24006J15134

Basic Information
Taxon OID	3300001450 Open in IMG/M
Scaffold ID	JGI24006J15134_10000237 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-53
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300001450 Open in IMG/M

Scaffold ID

JGI24006J15134_10000237 Open in IMG/M

Source Dataset Name

Marine viral communities from the Pacific Ocean - LP-53

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	38274
Total Scaffold Genes	60 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	51 (85.00%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

38274

Total Scaffold Genes

60 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

51 (85.00%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	49.5666	Long. (^o)	-138.6666	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

49.5666

Long. (^o)

-138.6666

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016211	Metagenome	249	Y
F038863	Metagenome / Metatranscriptome	165	Y
F043629	Metagenome	156	Y
F066157	Metagenome / Metatranscriptome	127	N
F071649	Metagenome / Metatranscriptome	122	Y
F081777	Metagenome	114	N
F092731	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24006J15134_1000023710	F016211	AGGA	MENLTQKQKEEIAELAADKAYDRFYLAVGKSVTKKLMWVIGAGAFAVWLYFNGDM*
JGI24006J15134_1000023737	F043629	AGGAG	MANSTINIEIDVLSVDVMIEVEVQWHMSEANELTIDDFYGYHFNYKTGEYTRIPEWLHKIIETTQLLEEEYTDLIDLNCDERTY*
JGI24006J15134_1000023740	F092731	GAGG	MSKNKLSTKAITVYNNLLELNWSEPYLTIEHIQAATGLGRSKLAPVLAELISASKVLHGNEEALGGVIETYTPKVKGVAYGYPLDYYTFDQWIGHKLDIN*
JGI24006J15134_1000023741	F081777	GAGG	MKDYKHKRLQASCEVRKQERLDKYLSIGLSALGGSIGVFCIIYATHVAFN*
JGI24006J15134_1000023745	F071649	AGGA	MDTFNTHCIKEAQDKLARIKADIKNMEAEDAIHRDAQLDAQGLKHEEWLEASMSAQRNMFTTARAKGVSIMAWKDTDFHDEHHYVVMAQNHKLEFVTWVWANGGFHDGHYYNDDEMAAWADWRERT*
JGI24006J15134_1000023750	F038863	GAG	MLMYKVYNYKCTLGHLNEHMVKGSPDTQKCKSCDAIATRQLSSPRSSLEPFSGDFAGATLKWVKDHERGRVQAEKANS*
JGI24006J15134_100002377	F066157	N/A	MWAIVLATMLASGEPQVPTIMSSYRTLDNCRKELLRVGTIGGYEPVVSPMVGLAVVKVGATKTITAFCIKDMRSI*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI24006J15134_10000237

Overview

Ecosystem & Geography

Associated Families

Sequences