Scaffold JGI24006J15134_10000179

Overview

Basic Information

• Taxon OID: 3300001450
• Scaffold ID: JGI24006J15134_10000179
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 46308
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (22.22%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004606	Metagenome / Metatranscriptome	431	Y
F013783	Metagenome / Metatranscriptome	268	Y
F017335	Metagenome / Metatranscriptome	241	Y
F018962	Metagenome / Metatranscriptome	232	Y
F022460	Metagenome / Metatranscriptome	214	Y
F048317	Metagenome / Metatranscriptome	148	Y
F076611	Metagenome	118	Y
F105240	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24006J15134_1000017910	F004606	GAG	MKTHRIFNKGQNVYCLLASHTNPNILLPVKGTILDSKWDPVNPLYQIRIIKFYDNMKFLKQHFFDMNFRHVFENRARKMILKADDFKTAKVLEDRLNEKDRERFYVVVESVMCTKTKVGLSELFEKVQLYMISKNLKEIRDISTRPFFKGPLSLDSTKEFDVRYKNSWADKFEKSNLDIDKYLNSLG*
JGI24006J15134_1000017912	F017335	N/A	MNIKSLTLKNKLTIDXTGEQYFDLTAPSFKXQQQLGVKALHYVTQDQVGRIDKVSEKYFGTGEYVDAICIVNNIFNPFSVNEGEILAIPNLKDINLVYKRPNPAARPSISLAQYVDTGRQSEQDQSRIQRLIQKAKTKKNGVKAPIPPNMLQMGQDAKTFGGGKIKLGANLPTRNSTNTESI*
JGI24006J15134_1000017920	F048317	N/A	MASPVIRDIYSRDALAPKFNDNTLEVSDSLSQLILKIENCLFTSKGDVLGAPGMGANLDDLIFSLVLSENTIQNNINSQITAYCLPRLAGFSVDCKVSFFSTLERDGCLVDIFVNEQRVIGALF*
JGI24006J15134_1000017922	F022460	AGGA	MATVKDKRVGFPSLYRATYEHGWLLKNTGFDYAPNLLKNTMSKYMFRNRHLGTFLNDYLSPIMVFYINRVKYLRIYFNFAVPKWYQKIN*
JGI24006J15134_1000017924	F105240	N/A	MAISVTEILGTDSLSGSRLVINDNFNVLASEINAMEVYFAPTAGTITNLNNLSTEALRVGLSTILLDINASTFDILTNVKMTGNLNMSFGGIFRNDTNPTSLNDTTAGSGMAIDVGTSTAIPPYTMNRCGNTDITNTLTISLFQGVIGQEIFFMCTEGSGTVNIQSPAATNYIVTTGANDIITLNAVGETVHLLAIDNGSSIPVWFIVGGDGYVLS*
JGI24006J15134_1000017927	F076611	N/A	MARALLDKASYSLVRTNPKLTGNVKVVSDGTDIYLESFSANTRLSSQKFKAFKVDGTSTYDRDVFKFFDFGKFPKEAAYEIFQEYEDDAVLSKYGNQYEMFYCAGTRSVASESYSQSLAMLAPLWLNEQMPGYFVIFRMDNPAAVNNFRAATENENTQSAQTATDFSKNVLENCTAIKTFDLSEGTELGSYIRNYRNQETFPKAPLNISWRKDEPILWSGISYNSGGFTSSGSYSYEDLVTKDSTIIQDEYLFTQGFQNNGILLANLLNMEFLFDDPTANDYSINRYFGMYVNDIQEGQFDLSGEGFYKNTEKTQLPKITTITEVSQYLNTPFQITNEQGILLFLDPNKTETVTGLPTPKRVDEVNSIFYVKDKEDNFHTVKKGSQWEENQIRLFDTQVDISLFTGYKDPDTFANASIISRAGVAQMYVKILDNLEDGFSIQFKDGATVVGTIFADSTLAPIPGKSFQRFFNPNGTLQEVTQSITSAINKGINENDRFFVASYNDTTIYVKSRFSGDRFNRLSFSMDYTQFPEALNQLQTYPITSLADFDKQFVGGNDVKNSLLKVELGDQDRFTPGDFIQTTGGYTIIGDWVPYTDEPIYNGLNEIIGYTDIDKYAIITCNDNQIMVTRSNQVALYSDYKPSFGRFSFFEVRDFDFDFYSTLYSQEGELDFEFKQYNQTEPGLVPVAYTGISNNTEVRNFYDNGGFYNLIGLLNDAEDSNPDDEYIKSEYVRLEENFLTSQASISRIAPYINKWGWVNDGKDVRNHPYRLDVNEAFGLNNFAPSKWDKVQEASGFTHEWYYLTKFPEYIKNDKEAIKKSWSYNVYDVKPNTEPTDPTISQAGFIPGTFQNTVADEFNKFFIVDSFDFSAGGGLIEQVDRQLRYGRLEGGDEKNFSEAFLRGVRIIAKEKAIGTEKPNFNARSLSYVPNGSFNDYRFSAILVPNLYDVKAIDTPDFEIKFIKNEKWKTVVMLISVNYSITCDQINTGSVSEQIIDRTSLYSINSNWKLDPNIPCAPIGYNNTVVRGAVSLTSSYIDTNGDLVIRFQPDKNGNIPNLVEDVRILADGTFGDIAFKIGLDDFIINGILSVVNTTTLRVGAGNFKKNGTPVNIPSSSPNDTQLRAANYIISDGGYNQYLERLNNISFGEMFDSVNQGNPTVVYETIKEDGSQVRNKDGSLAQTFGIELRAQADILKSIYIGVLPDPAKPTAFNLTEAVGYDLSLQKKPRLVPFARHAGYYSPYALNLLNFKRPYGSLTSQTIYEKAVSELCKWKNAEFSINSNKQTFGQIQNFFYHKVNEEDPSTVLELSRESAFPSLYPLINEIGIDYKDFYMFSSNWEPSYFTKSIDKSQTKKVIGTRSMFERKSFFGSKYLKVPETIVLETFKPSPFVKGAVRQPSLVDGTFMYLDQPSVTINKKTIQTAGVVNTRALRKKPSAPVESFYLFNQKRLMEYLFTPIKEQFLKYVNELYGWGDLETLDDDVNQYIRENILKLYKVDKVELYTLASRTKGGSTYTTAELTDAQKVNNGLTINNNVASKTLNTNPFDLRLIYNKRTGFSESFGFSVTIVKK*
JGI24006J15134_100001794	F013783	N/A	LILEGITFKLALDFFTFLKKNKITSTSIKVDFFNRVKHEYIDFADVTAMEVYYNTNYRPLDNCNLGDLVSISFFLAESNLYNFTTEFKAIDVTNNLKLETGSAYDRQRNAGRQVLIDRQIQLIKNAITEYVKYYSELKYIYVTGIYSPCYAVPGWSENTWYLKSFREAFTSTKDTSQFPYNDVIIEEYPPN*
JGI24006J15134_100001798	F018962	N/A	MIKIVLEPARNGVIKKVIDDNHGGGREHFTSTDVYEEEGDKNQYTYVKRFFFDLCDDLGLEIGSKFDKNVLDINAQWGSHYEPTAKDIEFKIKKLKSELKELEEWKNI*