Scaffold JGI20181J14860_1000064

Overview

Basic Information

• Taxon OID: 3300001404
• Scaffold ID: JGI20181J14860_1000064
• Source Dataset Name: Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-2 deep-072012
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17343
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (69.57%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location

• Location Name: Barrow Environmental Observatory site, Barrow, Alaska
• Coordinates
  • Lat. (^o): 71.2999
  • Long. (^o): -156.61

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051367	Metagenome	144	Y
F090676	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI20181J14860_100006412	F090676	GAG	MVAAWAGVLSLYCVAQEPAATPSSGSKGTTLIGCLTGPDADDHYTLTSMQHRMGVGVVGSEELKSGAGAKVKLTGSWEALPGAAGKKSDLTQRFKATAVSVMEEKCQVPNPTTPVSKKKAQQKK*
JGI20181J14860_10000642	F051367	AGCAG	MFSLSIVLIVAGLMFGGATALIGFGGLLGAWFHRSLGAPLPLPTFRTPAERRISMWVGVAGFVLWASLFVISLRVAP*