Scaffold JGI20189J14885_1001146

Overview

Basic Information

• Taxon OID: 3300001401
• Scaffold ID: JGI20189J14885_1001146
• Source Dataset Name: Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-3 deep-072012
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7826
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location

• Location Name: Barrow Environmental Observatory site, Barrow, Alaska
• Coordinates
  • Lat. (^o): 71.2999
  • Long. (^o): -156.61

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025819	Metagenome / Metatranscriptome	200	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI20189J14885_10011463	F025819	AGG	MDPANTSSMRNFSIFATLLFCVFAANSYAQDPVLYWSAADSETIPLDPASLHAGRVYHPAVGGGGLHVQIDSRYPVTVAMAWADEWNAAMRPGAPANFSLLCIKEHVTSAIYECHLPSDRPMIITFRDERRPEKPVLATIGAILGPGARQFISPNDLHIQYYNCIQPEFHWRRILDEKYQITPVPKVYSLMTPDHDGQELSVKIKSPIPVTVALLPSHLADQVYDKTLTLTDALDKTGCKERGVQSMSFNCTFDVAAGTQTLLILPDIDFSGHKKATVEADTVKCVEHCELLPPPPNP*