Scaffold Lau_10032419

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Lau_10032419

Scaffold Lau_10032419

Overview

Basic Information
Taxon OID	3300001392 Open in IMG/M
Scaffold ID	Lau_10032419 Open in IMG/M
Source Dataset Name	ELSC Metagenome
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2238
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Black Smokers Hydrothermal Plume → Black Smokers Hydrothermal Plume Microbial Communities From The Eastern Lau Spreading Center

Source Dataset Sampling Location
Location Name	Kilo Moana - ELSC (Lau Basin)
Coordinates	Lat. (^o)	-20.0	Long. (^o)	176.0	Alt. (m)		Depth (m)	2600
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000754	Metagenome / Metatranscriptome	906	Y
F006008	Metagenome / Metatranscriptome	384	Y

Sequences

Protein ID	Family	RBS	Sequence
Lau_100324191	F000754	N/A	IVVAAAVDTAGTAAADTTMDFTVNNAEFAKNASVSTLVTGEAFGWNNTGYVMNDMVTTGQVRNRPVITFTNGTAATRTVDVAVFIGG*
Lau_100324195	F006008	AGGAG	MPLVKKKLSIAAGATSDQVLQGTTYEYVDPGTRIVVAAAVDTAGTAAADTT

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