Scaffold BBDRAFT_10332451

Overview

Basic Information

• Taxon OID: 3300001371
• Scaffold ID: BBDRAFT_10332451
• Source Dataset Name: Baker-B-sed
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of South Carolina
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2575
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine Estuarine → Marine And Estuarine Microbial Communities From Columbia River Coastal Margin

Source Dataset Sampling Location

• Location Name: Baker Bay
• Coordinates
  • Lat. (^o): 46.28551
  • Long. (^o): -124.05187
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053662	Metagenome / Metatranscriptome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
BBDRAFT_103324513	F053662	AGGAG	MPITRKEFDDSIDTLSAKVLKLLESHPNDAFEIEELAEAVGGRQLEVWAILDALKQRKQVSGKCVKGTGYYCIAK*