Scaffold JGI11876J14442_10068415

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold JGI11876J14442_10068415

Scaffold JGI11876J14442_10068415

Overview

Basic Information
Taxon OID	3300001357 Open in IMG/M
Scaffold ID	JGI11876J14442_10068415 Open in IMG/M
Source Dataset Name	Combined assembly of Elkhorn Slough mat metaG (MD2A, MD6A, CD2A, CD6A)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	1669
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Microbial Mats → Hypersaline Mat → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location Name	Elkhorn Slough, Monterey Bay, California, USA
Coordinates	Lat. (^o)	36.82188	Long. (^o)	-121.744	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F056191	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI11876J14442_100684152	F056191	N/A	MFLLRASMHLLLPCIKCEARVRHALTAEMFKTFPSGGSMHASVKLEGIDGRAPQERVEHVA*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.