Scaffold JGI11876J14442_10015051

Overview

Basic Information

• Taxon OID: 3300001357
• Scaffold ID: JGI11876J14442_10015051
• Source Dataset Name: Combined assembly of Elkhorn Slough mat metaG (MD2A, MD6A, CD2A, CD6A)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 5188
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Microbial Mats → Hypersaline Mat → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location

• Location Name: Elkhorn Slough, Monterey Bay, California, USA
• Coordinates
  • Lat. (^o): 36.82188
  • Long. (^o): -121.744

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015419	Metagenome / Metatranscriptome	255	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI11876J14442_100150512	F015419	N/A	MKYELKITDEQGNEHLYNVVRSSSDEPKNLNDFILEALSISEXKRXLPXLXQCPNGLEVHPSIKMKFKDYGSSLVGDKLEAMMVTWRCLVLK*