Scaffold JGI12269J14319_10034372

Overview

Basic Information

• Taxon OID: 3300001356
• Scaffold ID: JGI12269J14319_10034372
• Source Dataset Name: Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3298
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.13
  • Long. (^o): 11.88

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014639	Metagenome	261	Y
F020887	Metagenome	221	Y
F025336	Metagenome	202	Y
F054526	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12269J14319_100343723	F014639	AGGAG	MSDISQSTNTPASSETGFLSRKWKSIRFFFAKRAFESKLEGILRAAAGHEGNALPVGNSQYQLLSAEADLLSTEFADRWDLDVDLLRARIPGLAKLAGLSVPPPATNYARLACLGMVAVPLALFLMGAMAGLVNVGFHLVGGR*
JGI12269J14319_100343724	F025336	GGAGG	MALIAFIAAAEAMLYCASRSKRGQTRRQQVLMGNSLDSVRALPLVDDYLKRKTAGASRVQTFVASKLAEVCRRAVHTRSFEYVLLHVIRTAVLKRRSKFLNKQGRITL*
JGI12269J14319_100343726	F054526	AGGA	MSNSQERLSVPELIEQVIGSGLFSLDDEPYFSWQGCEHCADGLGATVCDLHGYRSLGDTESLAFRVCADCIYRLYYGTEEN*
JGI12269J14319_100343727	F020887	GGAGG	MRTKITFYGEIAGHIWMPAVECTKAFHLELTRIPRNSKTRTYPGIAPRSMEITCLRDALLHLTNDGDFQSCAITWARLEVSHYYGEETGGTRSVKIRTRVWELRGQGQDADCFVEVRP*