Scaffold JGI20158J14315_10128885

Overview

Basic Information

• Taxon OID: 3300001355
• Scaffold ID: JGI20158J14315_10128885
• Source Dataset Name: Pelagic Microbial community sample from North Sea - COGITO 998_met_08
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 808
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Endopterygota → Diptera → Brachycera → Muscomorpha → Eremoneura → Cyclorrhapha → Schizophora → Acalyptratae → Ephydroidea → Drosophilidae → Drosophilinae → Drosophilini → Drosophila → Sophophora → melanogaster group → melanogaster subgroup → Drosophila sechellia (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, sampling site Kabeltonne
• Coordinates
  • Lat. (^o): 54.184167
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F073414	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
JGI20158J14315_101288851	F073414	N/A	DDMDCPEGQSFDVSQGKCVAKESAFGDPKTDEVIADVASSGADVGDEQKVQSCPEGHSLNPDSGICQPNPATADKTDNIGQTNTSIATEAKLASIEKSLKALSEKKPTAQVGLEDGVHTWKQVAENMAPSLRKYGKFEFDINLESLRSINTKQTRDRSGAITESFRTAPLQLQEAVSISGTHATQDLDTDVAIVPGGLSFRPVFEFAKVKRIEAGMDRARFFKTTIPANGSQTVGSTPSEATQTFTAIEVTPSTITGVYLVGDFDEIEN