Scaffold JGI20158J14315_10056598

Overview

Basic Information

• Taxon OID: 3300001355
• Scaffold ID: JGI20158J14315_10056598
• Source Dataset Name: Pelagic Microbial community sample from North Sea - COGITO 998_met_08
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1603
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, sampling site Kabeltonne
• Coordinates
  • Lat. (^o): 54.184167
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020913	Metagenome / Metatranscriptome	221	N
F021778	Metagenome / Metatranscriptome	217	N
F023859	Metagenome / Metatranscriptome	208	N

Sequences

Protein ID	Family	RBS	Sequence
JGI20158J14315_100565982	F023859	AGGA	MKKVXVKFIGVXKYXVTDNADPQKIKDMFRKDLELLPPVWANNIEAVMYANDEPEAEEE*
JGI20158J14315_100565983	F020913	GAGG	MLGIFGRNKPLSVLEDLQLDYNPSEFRKVQYVLELEGFICSLDPEFNKNGNLRKAVNRLRTQYNALIYTEICNCANKQYAKLKKNGSPYMHKAYIKDWAL*
JGI20158J14315_100565984	F021778	GGAGG	MALPKFLEDYTTVDELISKMNKEYPECRLVAEMVDNGEDWVIFKSSFYENKEDTEPKATGYARQTKADHNSWFEMASTKANGRCLRVVFSESTTAEEMIGIAPSKEAAPKKSIEKELEKAGIEYEDVSVSQTHIINNIKSFAMDVANDNTANAANWYAQALGELDIPEAKLTIDNMKSVKNKLQDIATNLQKEGA*