Scaffold JGI20155J14468_10027669

Overview

Basic Information

• Taxon OID: 3300001354
• Scaffold ID: JGI20155J14468_10027669
• Source Dataset Name: Pelagic Microbial community sample from North Sea - COGITO 998_met_05
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2767
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, sampling site Kabeltonne
• Coordinates
  • Lat. (^o): 54.184167
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011629	Metagenome / Metatranscriptome	289	N
F020898	Metagenome / Metatranscriptome	221	Y
F021057	Metagenome / Metatranscriptome	220	Y
F069439	Metagenome / Metatranscriptome	124	N

Sequences

Protein ID	Family	RBS	Sequence
JGI20155J14468_100276692	F020898	AGGAG	MHNVKLKVNLNKKIANLTNSILNNTNFAMQESAKNSCKSIYKNFKFNSVTKHADGNATHFTAQMYNNYYTGRLCMLTFKNNAFVSMYTLD*
JGI20155J14468_100276693	F069439	AGGAG	MRKLQNTNFTIYTNKNFKNSIFIKTNLKNNLTYMXSSMQKVAXXLQAHNLKNATVRILTKRFNSACAKKLAQAAVIRIANA*
JGI20155J14468_100276694	F021057	AGGAG	MQHLKTITKTKTTTVESVHVDTVYCVIQQCFNNLQVLEADCTSANYFINSANIFAQLTALYARYADSTDYISLKKVMQVFANNITYTDESSLFTTVVVKNTAMQNVQLENYVYLSN*
JGI20155J14468_100276697	F011629	GAGG	MLNTTQVKDLVKQRFGGSLTQVYLNKCYSNKQELADKRNMAFAVDGDAYKGVDLTALAQEIGCKRVKLHAAFLRGMQXGCWLRLQHVSYNK*