Scaffold JGI20155J14468_10000603

Overview

Basic Information

• Taxon OID: 3300001354
• Scaffold ID: JGI20155J14468_10000603
• Source Dataset Name: Pelagic Microbial community sample from North Sea - COGITO 998_met_05
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29058
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (68.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, sampling site Kabeltonne
• Coordinates
  • Lat. (^o): 54.184167
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004438	Metagenome / Metatranscriptome	438	Y
F040125	Metagenome / Metatranscriptome	162	N
F044458	Metagenome / Metatranscriptome	154	N
F054888	Metagenome / Metatranscriptome	139	N

Sequences

Protein ID	Family	RBS	Sequence
JGI20155J14468_1000060319	F040125	GGAG	MTEEKKEMSNEEPIILTFDDVPYRASDLSEEQLPIAVELNEIVPQLQRLEREHLKLNRFKNYLVQDFKRSLEVETPEAEQPEESE*
JGI20155J14468_1000060320	F004438	GAGG	MRNITFILIGLFATSCATVNSVIEGGKDIAMTTVDTTVKTAGSISGAALKDVSGVVNTVAETYEGVIDTVVENIDEQTDELQNKPEESK*
JGI20155J14468_1000060333	F054888	AGGAG	MDFFEENSGEGNGSNSYLKFLAKEKAWYIGENVYDMEYILLDPDTIQTGLGRYSGGYEFEFSDIPFSKVENKEGWKKAFSVWAFTSDKQVVQWERAAWGELQGFKSMCEKFWMQKAANEGQLPCFRYLGSRGVKFDSGFSSEVPEFEFVAWKPRPVEFAIPAWANDEDVPAPVAESPVEKTVVTDDDIPF*
JGI20155J14468_1000060335	F044458	GGA	MKNKDKKTYNEATLKLLSTYQDYKKEFHTKWGDQKRLDRLVGVDFRVKFMKAEQLFKAAALERVDSKTTKMIDMMYRAYAALEEEMQTLGYKPLEPHIRCFDWDGVIWYVTDLDYEIPRAMQRYKHEGKANFISIQELLRCVPKELMDMRLELAMMFEGSKFVRIEKK*