Scaffold JGI20159J14440_10020138

Overview

Basic Information

• Taxon OID: 3300001353
• Scaffold ID: JGI20159J14440_10020138
• Source Dataset Name: Pelagic Microbial community sample from North Sea - COGITO 998_met_09
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3157
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, sampling site Kabeltonne
• Coordinates
  • Lat. (^o): 54.184167
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004164	Metagenome / Metatranscriptome	450	Y
F043089	Metagenome / Metatranscriptome	157	N

Sequences

Protein ID	Family	RBS	Sequence
JGI20159J14440_100201382	F004164	AGGA	MTFLKQCLIVISLFLPLSMSASEDLKYNYEHDSLGDRDDAQGDVTFRTHIDNATTFEYAHVNINWKGGFFKSSITDDFIQKKEIKNGLVLYDIVEGNQKKGYSVFARHIQVNNYPVGFETKKIINDEGRHPDFSDYDWIFKFKAERVENLQINGRSHKALFTKLWGSRPTSTTNCQMTQPGMNFSNSMGEIYVETWFDLKDSKLLKQVFTKYGCVPSKRLISKETWTLAN*
JGI20159J14440_100201386	F043089	GAG	MTALDKNXLLWLLKEIQKSESLWKDELGYAVKLXQQKKEDHL*