Scaffold JGI20157J14317_10222856

Overview

Basic Information

• Taxon OID: 3300001352
• Scaffold ID: JGI20157J14317_10222856
• Source Dataset Name: Pelagic Microbial community sample from North Sea - COGITO 998_met_07
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 523
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, sampling site Kabeltonne
• Coordinates
  • Lat. (^o): 54.184167
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027658	Metagenome / Metatranscriptome	194	Y
F032445	Metagenome / Metatranscriptome	180	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI20157J14317_102228561	F032445	AGGAG	MQFKPFNKHLLVLPQKQEEDKEESLFIMPDEYQPPKSPYMICDIIDMSDDCTIDLGLGDIVVVERTTVQEIKIEMETFYVV
JGI20157J14317_102228562	F027658	N/A	MRDQLEKIIHNLKEVLEEVDKVEAGTYGYKSAAPRARKALMEASKELREVRTVIQEVKISHEEK*