Scaffold JGI20157J14317_10003915

Overview

Basic Information

• Taxon OID: 3300001352
• Scaffold ID: JGI20157J14317_10003915
• Source Dataset Name: Pelagic Microbial community sample from North Sea - COGITO 998_met_07
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11701
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, sampling site Kabeltonne
• Coordinates
  • Lat. (^o): 54.184167
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031778	Metagenome / Metatranscriptome	181	N
F045582	Metagenome / Metatranscriptome	152	N
F060659	Metagenome / Metatranscriptome	132	N

Sequences

Protein ID	Family	RBS	Sequence
JGI20157J14317_100039157	F045582	AGGA	MSGNPTNPDEPNSLEVDFSPESWKTEFHDEIKSVRLNGEKIAEIRDLMDEMKSIKEKNDRTIKGLSIAIISLTIIGLCFLGFGVSYLMRFKVDKLDEMIGEGVEKFDMTNKTFIHTDALVQLNDTWHPLLWDRKLQGWFVQKPNGAQRNFHDNIILPKKAYQQLSQSSLTWKQSKWHAPPGFPLPQ*
JGI20157J14317_100039158	F060659	AGGA	MPEGKDVFVAINGRVTKSVYKRMQYLAGVLDVSMSTLIANSVAEYIHQVTDEKDGEPSVDMEIARFAYSKKKPKDEDQ*
JGI20157J14317_100039159	F031778	N/A	MKDGEVIDKDPEEDMEQGIPLPSNVVEVETPSETWKTEFKNEISSLRINGEDVSKIHRAMEELRKMRHSSDRTLRNLIILITLLLCSGLGVGVFALDYLLRFNADKIDEVIDLNLLAIKKSEEGMIKIPLIAISLLEKHPNQMRWDANRSTWTFLDTFTGTRMDFSSDLMFYSPDVIEQLKIDFGLNWNGVTWNWPEGFGPKD*