Scaffold JGI20153J14318_10124582

Overview

Basic Information

• Taxon OID: 3300001351
• Scaffold ID: JGI20153J14318_10124582
• Source Dataset Name: Pelagic Microbial community sample from North Sea - COGITO 998_met_03
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 662
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, sampling site Kabeltonne
• Coordinates
  • Lat. (^o): 54.184167
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F084727	Metagenome / Metatranscriptome	112	N
F100936	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI20153J14318_101245822	F100936	N/A	MEKYKLYITSESGERETWTEGETVKECIDKLKDFHTFGEFEKEFFTKKGEDRLNKELNSGWYINLKNK*
JGI20153J14318_101245824	F084727	N/A	MKLGNLIERITYYTGIKWIWKKLYPDCKCKERQEQLNEIELW*