NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI20160J14292_10121156

Scaffold JGI20160J14292_10121156


Overview

Basic Information
Taxon OID3300001349 Open in IMG/M
Scaffold IDJGI20160J14292_10121156 Open in IMG/M
Source Dataset NamePelagic Microbial community sample from North Sea - COGITO 998_met_10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)879
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameHelgoland, sampling site Kabeltonne
CoordinatesLat. (o)54.184167Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004520Metagenome / Metatranscriptome434Y
F086293Metagenome111N

Sequences

Protein IDFamilyRBSSequence
JGI20160J14292_101211561F086293N/AMNKIIMSMSVIASGLLGYTAKQDGTRVEEALTNVQYVKSWVLEDLNSGAMDTIYAEYYLNILNETEDILIEEFTN*
JGI20160J14292_101211564F004520N/AMILTNKEKLKITWRVVDSLYEKLANELEYELENHNDFIETNDEFMDLFNEMTIKIVKYMRSELFQPMTNEDLK

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