Scaffold JGI20160J14292_10025063

Overview

Basic Information

• Taxon OID: 3300001349
• Scaffold ID: JGI20160J14292_10025063
• Source Dataset Name: Pelagic Microbial community sample from North Sea - COGITO 998_met_10
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3236
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, sampling site Kabeltonne
• Coordinates
  • Lat. (^o): 54.184167
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019027	Metagenome	232	Y
F029154	Metagenome / Metatranscriptome	189	N
F080516	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
JGI20160J14292_100250632	F019027	AGG	MSGATAAEFKKWEDHAKSVDYHALVFIIDDCRNAREAMKGWNPEKENYYADQGMTYSDELRRRIK*
JGI20160J14292_100250634	F029154	AGGAG	MELQKIHGLITNITQHYSAFAVDAEGQNTFITNNLARFLQLSVGDQVLMDVVPNHPDKAQTIPYRAVGCVKLKESLPEDEPEPDNGVLEQLLKEWTELKQSPKEIKKTVTKILSDADTYLITSEVVAAYREEQPDQADVSDKDINNACYRLFKQSKIARAEVWSKPDQSKCSFNLWAFDASRFTL*
JGI20160J14292_100250635	F080516	AGG	MSLERIEELGQILSKLDLTIQHMLSCKITPDDFPDLNDALTMLEEARGMLRKAYQNVRTDYDAQ*