Scaffold JGI20160J14292_10004789

Overview

Basic Information

• Taxon OID: 3300001349
• Scaffold ID: JGI20160J14292_10004789
• Source Dataset Name: Pelagic Microbial community sample from North Sea - COGITO 998_met_10
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9967
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, sampling site Kabeltonne
• Coordinates
  • Lat. (^o): 54.184167
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035780	Metagenome / Metatranscriptome	171	Y
F045679	Metagenome / Metatranscriptome	152	Y
F046977	Metagenome / Metatranscriptome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI20160J14292_1000478920	F046977	N/A	MVEKTTKYKVELQGDLLMVKDLNDNLLKGMAVPAWDAVNRFKVMVEKLKEVESKNQSK*
JGI20160J14292_100047893	F045679	N/A	MAKVKTITVNGKASEYDVTYTKAYVAKIISAQSDLYQELIPGELPYNAIKEIYVDGFLNAELVGSSLLYVKEKRRDITTHDPYVDRQEPQTPLTAGMGRYKGHTVPEEFDESHALDMVLNDMIESMTEEELAEFYKNEDTPEPFATDVELAEMKDESEGIYLQSVTSPPPYWVSDTTAGDLDITYTN*
JGI20160J14292_100047896	F035780	N/A	MENTIDVKSKDEVWWATTNEYDLEVNGENLSVRIAETPKSTEFFVWNESTGWEEADTDEGIMEIIYEAWSNGELE*