NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold JGI20160J14292_10000471

Scaffold JGI20160J14292_10000471


Overview

Basic Information
Taxon OID3300001349 Open in IMG/M
Scaffold IDJGI20160J14292_10000471 Open in IMG/M
Source Dataset NamePelagic Microbial community sample from North Sea - COGITO 998_met_10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)36604
Total Scaffold Genes45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (17.78%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameHelgoland, sampling site Kabeltonne
CoordinatesLat. (o)54.184167Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031650Metagenome / Metatranscriptome182Y
F067122Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
JGI20160J14292_1000047116F031650GGAMASMTQEEFDELKLAYQEAIPAGDALKQQLKAHNKEQKARLNQIHSYMRENNIMSADIGGITIEREEKTTVSVSVKTLEEVFDNPADLEQYKRDHTTTKEVLKVRKPKRRRTDNE*
JGI20160J14292_1000047132F067122N/AMYRSNYKSLFRCHTLTECVNYSLDSSVSKADLFLFLLDTYDILLSHADGSMIFDEDDDLPYLRLAEKLEKYAFVHWHSLFDRIPGQLKGWCEGMFLYVCCSKCRWLASKPGCTVVPSETREWMKEHRLRTHASYDTASWTAGDLLNALDVLEMKWFEFQKIDHHFMIYLNTLEFRAAWFVAHTAPSAIYDIQKHRIKVSEQQFQIHPALLHDFYIRFMGLRRSFAQSIMFDAQPPIKNMPESRWTEFIEKENRHLSIRKFRDRIADLTWENMARLSDTPRVSYECRGSRVSAYQSVASNRPLSLLDKLNSVCAYSKPPEVHANKFVIEGLHLQMVHAHFMSTYSVNFKNFFFCSSEKSWKHRQTLMTSVVPIILERRRRFDVMHRGLVHLVPTGTFAEAFQLWLLIVRRDYRGILYGSMDFGRLCRMMFDPPEAAQQRQISEGAVAYQWDV*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.