Scaffold JGI20154J14316_10019473

Overview

Basic Information

• Taxon OID: 3300001348
• Scaffold ID: JGI20154J14316_10019473
• Source Dataset Name: Pelagic Microbial community sample from North Sea - COGITO 998_met_04
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3819
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, sampling site Kabeltonne
• Coordinates
  • Lat. (^o): 54.184167
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016738	Metagenome / Metatranscriptome	245	Y
F045378	Metagenome / Metatranscriptome	153	Y
F059366	Metagenome / Metatranscriptome	134	N

Sequences

Protein ID	Family	RBS	Sequence
JGI20154J14316_1001947310	F016738	GGAG	LKDYLAPPKPVSPYKDLINDYEGPITKAAHGESGGLCHIFKSQLNPTARKKYNKRRVA*
JGI20154J14316_100194733	F045378	GGAG	MNSINHCHVTSQVNAHTTAWDMPEVTSDESTTEIVEELLAHGSVNINRTEYHVMDLYQYADEEDLCNLVFMTIRDPAAAKDLATQIITDCAIYYFGESNPGLAVQYYQESHGEY*
JGI20154J14316_100194739	F059366	AGGA	MISGSESVKTKVLENAVFSSILAGSRRVSEKNRQIAIGNELKLLQHHRELGHQTPLETERSLKTERLLKREHRRWNLTKGYFAISDGVEL*