Scaffold JGI20154J14316_10011117

Overview

Basic Information

• Taxon OID: 3300001348
• Scaffold ID: JGI20154J14316_10011117
• Source Dataset Name: Pelagic Microbial community sample from North Sea - COGITO 998_met_04
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5777
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, sampling site Kabeltonne
• Coordinates
  • Lat. (^o): 54.184167
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007530	Metagenome / Metatranscriptome	349	Y
F022424	Metagenome	214	Y
F095586	Metagenome / Metatranscriptome	105	N
F100409	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
JGI20154J14316_1001111711	F095586	AGGAG	MKNSTHYIKTSFRHEDYLNDILERAATLTKLSQSELIRNACLGQYVPMLQTASVPKRR*
JGI20154J14316_100111172	F007530	GGAG	MEKHPYDQLMETVADKMKEYENDNLGFGIFEKVDKDLVLSRGTAWDASGWKDYCDFGFGDV*
JGI20154J14316_100111177	F100409	AGGA	MSLKIKTTLEIASKLKDAKTFDARLFQPPHSQADKREMQKLLSDLQNENRAVILIDLGR*
JGI20154J14316_100111178	F022424	AGGA	MKNEMYLISQAVDVLIQSATHKKDYGRELETLDDVASVLNTLKCNIDRKSPITGNALKVAKYKLNKQNLLKHHEPDWDELF*