Scaffold JGI20154J14316

Basic Information
Taxon OID	3300001348 Open in IMG/M
Scaffold ID	JGI20154J14316_10003701 Open in IMG/M
Source Dataset Name	Pelagic Microbial community sample from North Sea - COGITO 998_met_04
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300001348 Open in IMG/M

Scaffold ID

JGI20154J14316_10003701 Open in IMG/M

Source Dataset Name

Pelagic Microbial community sample from North Sea - COGITO 998_met_04

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	12166
Total Scaffold Genes	27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	21 (77.78%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

12166

Total Scaffold Genes

27 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

21 (77.78%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location Name	Helgoland, sampling site Kabeltonne
Coordinates	Lat. (^o)	54.184167	Long. (^o)	7.9	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Helgoland, sampling site Kabeltonne

Coordinates

Lat. (^o)

54.184167

Long. (^o)

7.9

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006939	Metagenome / Metatranscriptome	361	N
F030435	Metagenome / Metatranscriptome	185	Y
F036783	Metagenome / Metatranscriptome	169	N
F059965	Metagenome / Metatranscriptome	133	N
F065669	Metagenome / Metatranscriptome	127	Y
F086976	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI20154J14316_1000370110	F086976	AGGAG	MSGDKIPPIDPVTGQFVTPLSGNEVYKTRKEVVDANLSGEINTERFYELLGVYMEAEDEAPEYGFVGVGCISFAEAMLQEYQDGVVRRIKIPTLYDEYSFKQESNDE*
JGI20154J14316_1000370114	F006939	AGAAGG	MALPLNMVTNVLSENQNKFITVKFLTKDNEERTYTGRMNVIKGLKGNERGRIAAEALRKAGYITLKTKQGYKCFNVDRVLGFVAGGRRIFGLGNEV*
JGI20154J14316_1000370115	F059965	GAG	MPLPPTMEMELMELGILKSDTEELESIAEQTGFYALRAETIAWHNTLIVDGEVMF*
JGI20154J14316_1000370119	F030435	N/A	MNNQDILDMCRRLASKYYNXQEXDDIVSEGVVLCLNMRAEGIKEPSXLYYSARTAMFEYVNVGMSKLSYPKGRSGRVASDEDVFEYVDTQDEQIPAEDLFGSYELKDSIEVLKRELSTKEWRLFMVLYNNNNSLTEASKVLKVSRQAVEQIRNNIRDKLVTICDLAI*
JGI20154J14316_100037014	F065669	AGGAG	MRHKITSPLVFVDTLESFFGESGATSNIIASALGDYMKTDWRDYVGSYSDACNVRVILCLSYDLDLPQLDAIEWNLYVNHNANYLGES*
JGI20154J14316_100037019	F036783	AGG	MEIVRQKYGRHVDTRVYLDLGYGEMEVDVEEIEMIDGELSGMAYCHQREIEMYVDHRDCERALAKYEEENEG*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI20154J14316_10003701

Overview

Ecosystem & Geography

Associated Families

Sequences