Scaffold JGI20154J14316_10001400

Overview

Basic Information

• Taxon OID: 3300001348
• Scaffold ID: JGI20154J14316_10001400
• Source Dataset Name: Pelagic Microbial community sample from North Sea - COGITO 998_met_04
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21204
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (35.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, sampling site Kabeltonne
• Coordinates
  • Lat. (^o): 54.184167
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017048	Metagenome / Metatranscriptome	243	Y
F031650	Metagenome / Metatranscriptome	182	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI20154J14316_1000140016	F017048	AGAAG	MSSFNYAPSKSSLRADTVVEFVNRSLLDFKMNEIPGMGPASIDKFSDHGIYTPAQIVAKFLSFVDSPNVTAQKVCEEFYNWANPIMGKANTHNLTFALANYAGEHGLFRFE*
JGI20154J14316_100014004	F031650	N/A	MSTPEFDNLKKEYIAALPELDALKAQLKNCNKAQKERLNQIHSYMRENNLMSADIGGVTFEREEKTSVQVNMKTLEEIIENPADLEQYKRDHTTTKESLKVRKPKRRRTESNEE*