Scaffold JGI20151J14362_10003285

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI20151J14362_10003285

Scaffold JGI20151J14362_10003285

Overview

Basic Information
Taxon OID	3300001346 Open in IMG/M
Scaffold ID	JGI20151J14362_10003285 Open in IMG/M
Source Dataset Name	Pelagic Microbial community sample from North Sea - COGITO 998_met_01
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	11107
Total Scaffold Genes	18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	17 (94.44%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location Name	Helgoland, sampling site Kabeltonne
Coordinates	Lat. (^o)	54.184167	Long. (^o)	7.9	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F078400	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
JGI20151J14362_1000328516	F078400	GGAG	MSGFEMKGVCLKPEINLQITRSTPTYGDCFNPAIPTDRLSTINWVVEGTISVYAASMELINDYGVGERMLVPNPDHLRFGKCLLVCTSANAEYYCLSNSVPDRYYNGEVIQLEANEERTFTENNGHLIFCSLGSLTNLDKYGLATIDSDSYVVTAGAEGAIITVFHDSTDD*

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