Scaffold JGI20151J14362_10001632

Overview

Basic Information

• Taxon OID: 3300001346
• Scaffold ID: JGI20151J14362_10001632
• Source Dataset Name: Pelagic Microbial community sample from North Sea - COGITO 998_met_01
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16213
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (90.24%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, sampling site Kabeltonne
• Coordinates
  • Lat. (^o): 54.184167
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000325	Metagenome / Metatranscriptome	1296	Y
F019643	Metagenome / Metatranscriptome	228	Y
F019646	Metagenome	228	Y
F040582	Metagenome	161	Y
F053980	Metagenome	140	Y
F060890	Metagenome	132	Y
F065685	Metagenome / Metatranscriptome	127	Y
F076077	Metagenome	118	N
F103053	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI20151J14362_1000163211	F040582	GGAG	MGLIEMNLQSIIIGYVVGVALMWSLCETLYGDNNEKRAEKDSENTRPRYDRRYHMLYGDTPE*
JGI20151J14362_1000163213	F019646	N/A	MSNNFEITYSTDCCGYPCHSDQDICPXCLEHCEVIEERVDYDCSEAVHFEASLDFHGAG*
JGI20151J14362_1000163217	F053980	GGAG	MNGYELLAQFEKEIKECFTVPNHWLPLDFQDQRTDSVSLADIERKCNQRDKCTLSSFAEESIERATRVQAYRSQIDRGEEITYIPR*
JGI20151J14362_1000163218	F076077	AGGAG	MFDEQDKLEITIDGLRNGDIFRNEDGVPVDECGDPIFEDDQ*
JGI20151J14362_1000163226	F000325	AGGAG	MKTAKGNDKLGKENCIVVSRPVGDTCPPSCEFLGNGCYAEQLEKIYPGVRPAGMQNLITEKNKIRAMLINAEKKDKDLRWHERGDFYKNGSELDIEYIDNILWACRSILAEGGKLPKMWAYTHIYDPKLSRILGKYITMYASVHNHDDVAKAKAAGFELFAWCDSDEKIAPKRPRGKKKADQWRSDLPKLVVLGDDRYITCPEIRRGRGVVTCTKSKNSVNCQLCVQGLANVLFPSH*
JGI20151J14362_1000163228	F019643	AGGA	MAKYYIKTGTLELIFSTDKEPYDACRRVIHELNANDEYDEYMYLDERGYRDYTSADTTTFVIDTEQILRKEGYIK*
JGI20151J14362_1000163229	F060890	AGGA	MIDSMKLTKHDYEMIADILDAHYEETVELQKNHYLNDDTDYFKQLEYLEELIDKVVYMVGVCSSEEG*
JGI20151J14362_1000163232	F065685	AGGAG	MKPVVGIGSNTKYGRVLKVQHDGVVVENSRGEREVVSFRKIESTLKGVKK*
JGI20151J14362_100016329	F103053	GGAGG	MNQYVEKNLYDVLDRFDTPKLQVYLLACQEEKELDGVRVAANILRVRFINGE*