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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300001346 Open in IMG/M |
| Scaffold ID | JGI20151J14362_10001499 Open in IMG/M |
| Source Dataset Name | Pelagic Microbial community sample from North Sea - COGITO 998_met_01 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 16864 |
| Total Scaffold Genes | 52 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 42 (80.77%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED197 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Helgoland, sampling site Kabeltonne | |||||||
| Coordinates | Lat. (o) | 54.184167 | Long. (o) | 7.9 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002485 | Metagenome / Metatranscriptome | 555 | Y |
| F021675 | Metagenome / Metatranscriptome | 218 | Y |
| F024675 | Metagenome | 205 | N |
| F028861 | Metagenome | 190 | Y |
| F091859 | Metagenome | 107 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| JGI20151J14362_1000149911 | F002485 | AGGAG | MKTQIDKKSLYQKMQGDKIIYYSYNTTVAIKTPIDTYVCENVWSVTTAKHLNRIEELTGSNREYRMRYKDFREFCINNNVDKHYI* |
| JGI20151J14362_1000149921 | F024675 | AGGAGG | MKKYNQYTLENYFKILEIQTGRKNPCDIMEFLEEQYFSKSKATHVKYKDMDITHLIRVMLNASDDVENNRLEVIRLRKKISKLTKVLEG* |
| JGI20151J14362_100014993 | F021675 | N/A | MPLYTFKNKKTNKEYDEVMSYEELQEYLKQKHIQQIFKLNIYRYSDAGGIKDQFTDWAKDKNVSGKGEFNPYGKGKKGFDKMKKEQEGKKDNG* |
| JGI20151J14362_1000149936 | F028861 | GGAGG | MADRIIYRLWEYDSSTGDEKIWYSHLRKNLENQFPTISEDQHITEIKFDANDMESLCDKLNNDELEEE* |
| JGI20151J14362_100014998 | F091859 | N/A | MRTKQKLDKRTRARLRELSRTESVYNLQGSNSTYRGFSIHGGKSKRAYYQAISNANQNQLANFVDSGRSQIKY* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |