Scaffold JGI20152J14361

Basic Information
Taxon OID	3300001344 Open in IMG/M
Scaffold ID	JGI20152J14361_10001675 Open in IMG/M
Source Dataset Name	Pelagic Microbial community sample from North Sea - COGITO 998_met_02
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300001344 Open in IMG/M

Scaffold ID

JGI20152J14361_10001675 Open in IMG/M

Source Dataset Name

Pelagic Microbial community sample from North Sea - COGITO 998_met_02

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	14230
Total Scaffold Genes	26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (19.23%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

14230

Total Scaffold Genes

26 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (19.23%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (33.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location Name	Helgoland, sampling site Kabeltonne
Coordinates	Lat. (^o)	54.184167	Long. (^o)	7.9	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Helgoland, sampling site Kabeltonne

Coordinates

Lat. (^o)

54.184167

Long. (^o)

7.9

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F080617	Metagenome / Metatranscriptome	115	N
F086290	Metagenome / Metatranscriptome	111	N
F099229	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
JGI20152J14361_1000167515	F086290	N/A	MMSIYDKLIDSLEGYAVPYEDHPQQSVRDFEYDHPLTGIEKDPIVNIDGSTFNINTIEEDLSLDEIEKIYDKLQIASQLTVMRENDEDRKENLFTYYKGRKNQYIDKKIPRTSTIYLRNLKNHINSIIYKIKAKQKDQQANELLPTLEKFLVIHKKSNPKLYPDWLKLNFKEIKWGDLYIQPVINIEKLLESGDDIRIAKKTRDFVSNIWGRLVNADTRNFLLRQKHVNVRTTYVLFEDFDKYMKNVVNKVIKPEIKNLPRGKECVHSIVFRYRKNLDDIEIQIHPRYRTDCTESYWNRFDTYAFEKEIQGILSNYGWVKGVNYQTSTYRD*
JGI20152J14361_100016756	F099229	N/A	MDKDIDKIVEIGKVLLNTPTLRSIYKDKFEINSIDFEFVEKTSNSQFTAQYEHYIFKVTLYTDISLNFDEGIRSGEIEGYDEIENEIWEYGIDPFYLADVIIPEQILNIILPKGKDARKVAIELSIIGDEGQVIWNDHMFGRPASSQFH*
JGI20152J14361_100016757	F080617	AGGA	MVDNKLKWSLEKLLNTVGRKLAMNYYGFDSEYEVVSIIDEKTGEEVTDFNFGDTENYTAIVKSKELLPEIFDVKIEPLFRYGKYAQPMDLQFNLENLTKYISPNQIAIQLVGPEWKPGENTYRTLQSFEDKWGRSLDRDANDFKVNPDAWIELSNGSVVDKLTGDSFPLMFNGLIDKTEVWNIARVDDDEWWGSLTDLDKERLTDNFS*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI20152J14361_10001675

Overview

Ecosystem & Geography

Associated Families

Sequences