NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI20172J14457_10024280

Scaffold JGI20172J14457_10024280


Overview

Basic Information
Taxon OID3300001343 Open in IMG/M
Scaffold IDJGI20172J14457_10024280 Open in IMG/M
Source Dataset NameNasutitermes corniger P5 segment gut microbial community from laboratory colony in Florida, USA - Nc150 P5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)722
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location
Location Namelaboratory colony in Florida, USA
CoordinatesLat. (o)26.0625Long. (o)-80.2332Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017575Metagenome240Y

Sequences

Protein IDFamilyRBSSequence
JGI20172J14457_100242803F017575N/AMVSMEIIFNLLNAELNPICHLLVLLGDLTFRVPCIVNIFQYISNKMQRYTVYLYLETA

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