Scaffold JGI20132J14458_1010660

Overview

Basic Information

• Taxon OID: 3300001339
• Scaffold ID: JGI20132J14458_1010660
• Source Dataset Name: Hot spring and microbial mat streamer communities from Octopus Spring Streamers, Yellowstone National Park, USA - OCT_B
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1481
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring And Microbial Mat Streamer → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location

• Location Name: Octopus Spring, Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.376
  • Long. (^o): -110.69

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013155	Metagenome / Metatranscriptome	274	Y
F075483	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI20132J14458_10106602	F075483	GAG	MMIELLAVQAITNLALAFFVIKLRRELYPMVAAAGQPYASFWIRSVDVLVVEAPQFEAAKTVIRVRWLFSEELHLTYSFRVYDVAMHPYRRHHYVRWRAWMQGDDRYRCEVEKPRGLARIYTKAIDVFCKEKEPPKEVVILPSRWRKRRYKRWTKPVRSGSAPP*
JGI20132J14458_10106603	F013155	N/A	IALANLAVTVWLLRLLFPVWRELRRIVFALDHFDFDKLAKQFLNGEKPLAEAVDIKVSEKKEEGYRELTVTRIYRKPLDPREIQANFVRQMAEKLQ*