Scaffold ML8_10016727

Overview

Basic Information

• Taxon OID: 3300001335
• Scaffold ID: ML8_10016727
• Source Dataset Name: Wetlands benthic microbial communities from British Columbia, Canada - ML8
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3794
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Pseudoalteromonadaceae → Pseudoalteromonas → unclassified Pseudoalteromonas → Pseudoalteromonas sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Wetlands → Unclassified → Wetlands Benthic → Wetlands Benthic Microbial Communities From British Columbia, Canada

Source Dataset Sampling Location

• Location Name: British Columbia, Canada
• Coordinates
  • Lat. (^o): 49.283333
  • Long. (^o): -119.583333

Associated Families

Family	Category	Number of Sequences	3D Structure?
F060726	Metagenome / Metatranscriptome	132	Y
F062580	Metagenome / Metatranscriptome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
ML8_1001672711	F062580	GGAGG	MKIVTINMELVIDDDIKDSFIPEYLNDKLYTDPEFFGDFGPENIVGVITCVE*
ML8_100167272	F060726	GGA	MYRNVLLTDKEIAILKTIISQTLAEKITCQAKNLTIIHNRLREIKPLVSNNQFFNYGK*