Scaffold A21PFW6_1025661

Overview

Basic Information

• Taxon OID: 3300001333
• Scaffold ID: A21PFW6_1025661
• Source Dataset Name: Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A21-PF)- 6 month illumina
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Tennessee
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1048
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost And Active Layer Microbial Communities From Mcgill Arctic Research Station (Mars)

Source Dataset Sampling Location

• Location Name: Axel Heiberg Island, Nunavut, Canada
• Coordinates
  • Lat. (^o): 79.26
  • Long. (^o): -90.46

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006205	Metagenome / Metatranscriptome	379	Y
F094592	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
A21PFW6_10256612	F006205	AGGAG	MDDLKQTLDKLREELMNAGKRLADLAEKGKAELPAAAKRIDEEYQRLQKLLDAAVDKLRRK*
A21PFW6_10256613	F094592	N/A	EICLPDRPLSDIEDDAIQRSIQDAPYIIYRRYHLAHESWRLGIVYSVAPPTVGDIQILSAYRAGHEARPHLV*