Scaffold LCLOrf001_1000737

Overview

Basic Information

• Taxon OID: 3300001325
• Scaffold ID: LCLOrf001_1000737
• Source Dataset Name: Marine microbial communities from the Red Sea - Atlantis II brine metagenomic assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6467
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The Red Sea

Source Dataset Sampling Location

• Location Name: Red Sea
• Coordinates
  • Lat. (^o): 21.351508
  • Long. (^o): 38.078207

Associated Families

Family	Category	Number of Sequences	3D Structure?
F106033	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
LCLOrf001_10007371	F106033	GGTGG	MSMYDTEAEKVLEQWASSKYAVLECNMDPDHDDVEIAGNADFVHHDSGEQFSWDGWTSVVFITSLRHDGNFGLRLKSTDNDIIPFRARGDSAERILSGVTAIYFNNTGTAGTNYLLLEGY