Scaffold C688J14111_10014421

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold C688J14111_10014421

Scaffold C688J14111_10014421

Overview

Basic Information
Taxon OID	3300001305 Open in IMG/M
Scaffold ID	C688J14111_10014421 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from Hopland, California, USA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2285
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From Mediterranean Grasslands, California

Source Dataset Sampling Location
Location Name	USA: Hopland, California
Coordinates	Lat. (^o)	38.99297339	Long. (^o)	-123.0674491	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F080395	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
C688J14111_100144211	F080395	GGAG	VTAVLLAALALTPALHDLRVTNGSAPFAGDRPLLTTVSPNGDGFRDRAIVHFRLTQPARVQLDVLATNMVRAGKGGTSVVWHTTRLFGTRPGT

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