Scaffold B570J14230_10036070

Overview

Basic Information

• Taxon OID: 3300001282
• Scaffold ID: B570J14230_10036070
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - Practice 20APR2010 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1720
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, WI
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002869	Metagenome / Metatranscriptome	524	Y
F029756	Metagenome	187	Y
F034468	Metagenome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J14230_100360702	F002869	AGGAG	VNTSEITEEMLDRKTAWCEQNLFWSSAAKVQKMTDFYFEKTRDSVDQDWPESFDGVYLAQVLNVERVSYRIYYSQDKLTCRLFVFLPHCTYPEKQKMLDMGFVIAKPGDTDNIPDKPVEQIVEEIEQ*
B570J14230_100360703	F029756	GGAG	MNKRKITTRVIFDGAVDKTYTQMRQVYTDDQGEYVNCDRRQYRIDNNSFDIVYTSGQAITFSQLVEKITQG*
B570J14230_100360707	F034468	GGAG	MNYYITYELVEEFLQKHDFRCVFELDAPMKIFTRLMTAEFYTTQDVRGREADFRECWALSEIYCPHEGIDRRSEYGMEVV*