Scaffold B570J14230_10003253

Overview

Basic Information

• Taxon OID: 3300001282
• Scaffold ID: B570J14230_10003253
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - Practice 20APR2010 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6534
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (84.21%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, WI
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001562	Metagenome / Metatranscriptome	670	Y
F003663	Metagenome / Metatranscriptome	474	Y
F006984	Metagenome / Metatranscriptome	360	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J14230_1000325319	F006984	AGGA	MPNWCYNTLTIQGPKAEIDYIKDKLNAPFTLAQETFGMGDISTMGFPTKIEQVTYSNPVFAFFNIHSYKDDGIT
B570J14230_100032532	F001562	GAGG	MKSQLEKEIEIKESFDQMLDDSYPDVKIGYSTFTASEILFNCDPIAYQIGLVEHEDYMREEGHID*
B570J14230_100032539	F003663	AGG	MLATAIGILDATKDSIFDDEIMGLAGELHERRNELSDETFAKYLFMYSTALSSKVADLVTKVCLSKEEMSVLCATIDEMDNLSETILEEDNNGE*