Scaffold B570J14230_10000890

Overview

Basic Information

• Taxon OID: 3300001282
• Scaffold ID: B570J14230_10000890
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - Practice 20APR2010 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12153
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, WI
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017288	Metagenome / Metatranscriptome	241	Y
F028145	Metagenome / Metatranscriptome	192	N
F030360	Metagenome / Metatranscriptome	185	N

Sequences

Protein ID	Family	RBS	Sequence
B570J14230_1000089010	F030360	N/A	MSEQTYMNLKDAVKRPVLSEKTVNRANKTFVRMVDNYQKWNESITADEPRETYEDDIFNCLFEYDLDGYNLAEYLKSKVNLAFCDAELVDILDDMIYVKKSLEDEMLKQWVKENFLTISDDVVGKKVNVKQGSRKYENLYITGIRPDTYQVTISDNINAKGGRIVGFENVTFVD*
B570J14230_1000089015	F017288	N/A	VIVNRGYHNTQTQRKHMADNNKTPYELRWEILKEMLCITREEWSTKKELAQYNAEKSGKSLEYIGDIPLHDALQRAENVYASFICKK*
B570J14230_100008907	F028145	N/A	MKIFLAFFINLALSLGTSILLYKLFKVDVSPTIISIGLIVXYMCLPQRFHDWIAEK*