Scaffold B570J13894_1002357

Overview

Basic Information

• Taxon OID: 3300001275
• Scaffold ID: B570J13894_1002357
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - Practice 29OCT2010 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2117
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, WI
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013753	Metagenome / Metatranscriptome	268	Y
F071195	Metagenome / Metatranscriptome	122	N

Sequences

Protein ID	Family	RBS	Sequence
B570J13894_10023574	F071195	AGGTGG	MTTTNDAMYVALKAQYPTLSTLGDMMYAFAQDNGYNFRDTLGYEFYAATGAVGTTRGDLANSYWNDPDFFFNNLELENGNDLLLEDGSFVLMEAGNG*
B570J13894_10023575	F013753	N/A	MANSEEMTLTVAQQNYLDWLCTAPSERVPASKAKYAIEYGVDETTLRRWQKKEVFLNEWKKRVDDIQGSPERTQKLLDTLYNKALEGDTKSAQLYLQATNRMLPPTVTVQSNKKATELSDSELDELIGQIAAHEKSRRNFKVV*