Scaffold B570J13894_1000017

Overview

Basic Information

• Taxon OID: 3300001275
• Scaffold ID: B570J13894_1000017
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - Practice 29OCT2010 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23514
• Total Scaffold Genes: 63
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 40 (63.49%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, WI
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000808	Metagenome / Metatranscriptome	882	Y
F017301	Metagenome / Metatranscriptome	241	Y
F037701	Metagenome / Metatranscriptome	167	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J13894_100001724	F000808	GGA	MEYTYSLTTSYDGELINTLRVNDMLEAVNAWDKCVDYGFAKEYATYNLSDPTGKMYTKTFYTNGEVVIK*
B570J13894_100001751	F037701	N/A	MIKSKEWRVSNRVWLGVGFAPRRIALGFSVDRFNATIDFLWFWVSLEY*
B570J13894_100001762	F017301	AGGAG	MSNIDTKQLKAMGASYGRSVLGAGLALYMSGVTDPKDLWAALVAALAPVILRAINPADQAFGLLPTVGAVDTALKAVKAPAKKAAAKKKK*