Scaffold B570J13895_1000808

Overview

Basic Information

• Taxon OID: 3300001274
• Scaffold ID: B570J13895_1000808
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4857
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, WI
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002398	Metagenome / Metatranscriptome	563	Y
F009266	Metagenome / Metatranscriptome	320	Y
F060914	Metagenome	132	N
F093841	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J13895_10008083	F093841	N/A	MKLNLSSMRMPTLKIEKFIYMADGFYVYKMEDGYAVKDQFGYTLKTAKTVKTCENYVQLQLQTRRAAERYAIEEINKSKV*
B570J13895_10008084	F060914	AGCAG	MQLKRLIKVRSDISASIDPIQLYQVDDYFTAEENGIELFRFKSQHLCSIKAKELIRRRKNEKNARIIQDINELKAQGIL*
B570J13895_10008085	F002398	GGA	MIPLISIFLLTSVDPIKNFVSLKTYISENAKAHCYVYFINEDIPDFPRVNIIEKSKFDFFAYLDTIGVEHSKVGSYYFFRRKPK*
B570J13895_10008086	F009266	AGAAGG	MTNKERKILDKEIQYLCDYQDRVKAIREYTGINPGYNFLKEVETIESLYKSVLENRKHEKSTYFSVGTSGWFVIYLRDKKKYKEGEEFSIKIYHTFVWSDNLD*