Scaffold B570J13895_1000472

Overview

Basic Information

• Taxon OID: 3300001274
• Scaffold ID: B570J13895_1000472
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6901
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (56.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, WI
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010764	Metagenome / Metatranscriptome	299	Y
F019061	Metagenome / Metatranscriptome	232	Y
F030059	Metagenome / Metatranscriptome	186	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J13895_100047219	F030059	N/A	MNETLNKNLTLIQEVANKALELHKNSTERFGGVNYANLRVVDVWVKYSIHEEDLEYGVLIEECSPTSYDFQDYMLEYLKDNLPNNLGWSIYVELDW*
B570J13895_100047223	F010764	AGGAG	MIKIQKTYHLALTEQQAKELYWILKDVNLDVDNELKLVYHELKKLFDSGIR*
B570J13895_10004729	F019061	N/A	MKNYPMKKMTEPTDTEILEFLLNQFHPHNLQMNGESDWVFMNGGSRMNHLKGKTVRNAVITAMRAK*