Scaffold B570J13895

Basic Information
Taxon OID	3300001274 Open in IMG/M
Scaffold ID	B570J13895_1000432 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	7233
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (73.33%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium	(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, WI
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)	Depth (m)
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F008494	Metagenome / Metatranscriptome	332	N
F008552	Metagenome	331	Y
F024557	Metagenome	205	Y
F033803	Metagenome	176	N

Family

Category

Number of Sequences

3D Structure?

Metagenome / Metatranscriptome

332

Metagenome

331

Metagenome

205

Metagenome

176

Protein ID	Family	RBS	Sequence
B570J13895_100043210	F008552	N/A	MNVMIISFEASANIDTTLFGYFSMQYDQEFFSDIRENLTEISKDDTLSFKLDPEEVKLLQGSYENVKRVISISDVEQNKFTNVFKRKFDTSGFKKFKNVNLHIDKDYFYFTGHHENKNGTKPVEFQSLNFDVRFIESLENKFKSMVN*
B570J13895_100043213	F033803	N/A	MTINLRKNIARFIYILDQTTDKDSRAKVLKELDLTEAEFQELVGNLLEFSNSANKEWYCCNPEYHGFIETFKIISEKTNTEFLI*
B570J13895_10004326	F008494	AGGAG	MTKTEVITMFMNAVGQYTTAIDKTADSNINYKKSVYALEDAVNLIYRNVDAKELGSNAEARNAKVSEKTQDLIIAKREAEYQLETARANESRIKAEVDQIKYIIRALEVKEEA*
B570J13895_10004329	F024557	N/A	MNSQVWIYFSKTGTGYELSGSDIISGIDAFINMDGTYLVEYSYSDLMNDMHFFIYEWDNSQKKRRTVYESYQKELVLMGMVKNIDKLPLNVQQKILTMYVSDAEELELEKNANS*

Protein ID

Family

RBS

Sequence

B570J13895_100043210

N/A

MNVMIISFEASANIDTTLFGYFSMQYDQEFFSDIRENLTEISKDDTLSFKLDPEEVKLLQGSYENVKRVISISDVEQNKFTNVFKRKFDTSGFKKFKNVNLHIDKDYFYFTGHHENKNGTKPVEFQSLNFDVRFIESLENKFKSMVN*

B570J13895_100043213

N/A

MTINLRKNIARFIYILDQTTDKDSRAKVLKELDLTEAEFQELVGNLLEFSNSANKEWYCCNPEYHGFIETFKIISEKTNTEFLI*

B570J13895_10004326

AGGAG

MTKTEVITMFMNAVGQYTTAIDKTADSNINYKKSVYALEDAVNLIYRNVDAKELGSNAEARNAKVSEKTQDLIIAKREAEYQLETARANESRIKAEVDQIKYIIRALEVKEEA*

B570J13895_10004329

N/A

MNSQVWIYFSKTGTGYELSGSDIISGIDAFINMDGTYLVEYSYSDLMNDMHFFIYEWDNSQKKRRTVYESYQKELVLMGMVKNIDKLPLNVQQKILTMYVSDAEELELEKNANS*

NMPFamsDB