NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold B570J13875_100607

Scaffold B570J13875_100607


Overview

Basic Information
Taxon OID3300001267 Open in IMG/M
Scaffold IDB570J13875_100607 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 31AUG2010 deep hole epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2228
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (30.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005727Metagenome / Metatranscriptome392Y
F029368Metagenome / Metatranscriptome188Y
F064683Metagenome / Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
B570J13875_1006073F005727GGAMMRTLTRSRSPEFHRATMLRLVIGGTLLWLLWEPIRPVRVVTADALSTAADLIAR*
B570J13875_1006075F029368N/AMRYNPATDRALSIDEIAAQCKAAIMKADERRYVDQVADRIYDEILSAARWENDLLIAA*
B570J13875_1006076F064683N/AMTADLAAALLNRAANGAELLSILDSITDSVEQENIADAAAHYAAISAPTLSEVQF*

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