NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Draft_10278801

Scaffold Draft_10278801


Overview

Basic Information
Taxon OID3300001239 Open in IMG/M
Scaffold IDDraft_10278801 Open in IMG/M
Source Dataset NameTailings pond microbial communities from Northern Alberta - Syncrude Mildred Lake Settling Basin
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMcGill University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)611
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified → Hydrocarbon Resource Environments → Hydrocarbon Resource Environments Microbial Communities From Canada And Usa

Source Dataset Sampling Location
Location NameFort McMurray in northeastern Alberta, Canada
CoordinatesLat. (o)57.01116Long. (o)-111.6Alt. (m)Depth (m)0 to .1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007685Metagenome / Metatranscriptome346Y
F021289Metagenome / Metatranscriptome219Y

Sequences

Protein IDFamilyRBSSequence
Draft_102788011F021289N/AYPVLFNDVSEFQIQYVHPLPQNEVIKCDSAGFGLVLMHRSIVPIMREKYPNQSMFMETAGGHDDQFIGEDIIFFRKMKAAGIPLHAHTGALVKHMKRFSLDYDYYGMYWTMDSIQKKMKEQPN*
Draft_102788012F007685AGGAGVAGRDITEGRATRAIAVDVGVVSTSAIWQNTDVAYDVAVGGMPFIYANQRCTSLYPTDCTIPTR*

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