Scaffold JGIcombinedJ13530_103546936

Overview

Basic Information

• Taxon OID: 3300001213
• Scaffold ID: JGIcombinedJ13530_103546936
• Source Dataset Name: Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 751
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland → Wetland Microbial Communities From Twitchell Island In The Sacramento Delta

Source Dataset Sampling Location

• Location Name: Twitchell Island in the Sacramento/San Joaquin Delta, CA
• Coordinates
  • Lat. (^o): 38.107057
  • Long. (^o): -121.647578
  • Depth (m): 0 to .12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054137	Metagenome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
JGIcombinedJ13530_1035469362	F054137	AGGAGG	MIYIVRNRYKESLKPEDFQKVNRLIDEGIIPSMERIKGVKSVRAFNSFAGEIILLVEIDELAAIDRALVDEEYNKIASQMFDYMVRVGGDVWYDRKIWEKCYGRR*